To main content

Virtual labeling of mitochondria in living cells using correlative imaging and physics-guided deep learning

Abstract

Mitochondria play a crucial role in cellular metabolism. This paper presents a novel method to visualize mitochondria in living cells without the use of fluorescent markers. We propose a physics-guided deep learning approach for obtaining virtually labeled micrographs of mitochondria from bright-field images. We integrate a microscope’s point spread function in the learning of an adversarial neural network for improving virtual labeling. We show results (average Pearson correlation 0.86) significantly better than what was achieved by state-of-the-art (0.71) for virtual labeling of mitochondria. We also provide new insights into the virtual labeling problem and suggest additional metrics for quality assessment. The results show that our virtual labeling approach is a powerful way of segmenting and tracking individual mitochondria in bright-field images, results previously achievable only for fluorescently labeled mitochondria.
Read the publication

Category

Academic article

Language

English

Author(s)

  • Ayush Somani
  • Arif Ahmed Sekh
  • Ida Sundvor Opstad
  • Åsa birna Birgisdottir
  • Truls Myrmel
  • Balpreet Singh Ahluwalia
  • Alexander Horsch
  • Krishna Agarwal
  • Dilip K. Prasad

Year

2022

Published in

Biomedical Optics Express

Volume

13

Issue

10

Page(s)

5495 - 5516

View this publication at Norwegian Research Information Repository